Related Issues (20)
- Implement OTU classification
- Force grass species to have a valid NCBI taxonomy ID to be added to the database
- Enable association between taxonomic classification and tree in microbiome analyses
- Improve ASV definition
- Enable building multiple species studies
- Build and describe test data in details HOT 1
- Update description in admin pages
- Update/review description of all new classes and functions in CoNekT Grasses Microbiome
- Implement function to get NCBI taxid from GreenGenes taxonomy path
- Implement Generic Taxonomy Method class
- Revise OTU profile and run associations
- Import GreenGenes taxonomy records
- Ensure all SILVA records have valid NCBI taxid
- Adapt expression field in expression profile JSON text HOT 1
- Add classification method cannot find GG record by taxon path
- Implement GTDB database and associated functions HOT 1
- Implement connections to data in CoNekt Grasses
- Update the features page
- Enable multigene and multimicrobe networks in custom transcriptome-microbiome network
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from conekt_grasses_microbiome.