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a-hurst avatar a-hurst commented on September 22, 2024 1

Hey @sappelhoff, I've been taking some time for myself and for other projects but I can definitely try to get #99 finished up in the next few days! Apart from other work, the issue is that an API-changing PR like that has a tendency to snowball as you encounter other issues and things to clean up, so I'm going to try breaking it down a bit to make things simpler/easier.

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yjmantilla avatar yjmantilla commented on September 22, 2024

Hi @sappelhoff !

Sorry I have not been much active. There has been quite a lot of work on my hands.

@yjmantilla will you manage to finish Compare RANSAC in pyprep and autoreject #36, and if yes, can you estimate when?

Tbh I have forgot about that. What I get reading the comments there is that the goal now is to have a documented example that compares both RANSAC's in an isolated way (that is, not as a part of PREP or Autoreject, but just as something that finds bad channels).

@a-hurst commented that

Yep, this definitely seems useful! I still need to read this PR over properly so it may have this already, but it would be great to have a section in the example that compares/contrasts the usage of PyPREP vs AutoReject (i.e., types of noise detection, full file vs per-epoch) so that understanding when/where to use each is clearer to newcomers (I remember getting confused by this myself last year when first setting up my EEG pipeline).

From this what I get is that whatever functionality that PR tried to do, it is already done on another. Thus I should focus myself on a documented example.

Now, originally it was only about RANSACs, but @a-hurst mentions a Pyprep Vs Autoreject comparison. For me that would be two different documented examples.

So, what is expected for 0.4 is a documented example of PyPrep RANSAC vs Autoreject RANSAC comparison (not the comparison of the whole packages). Is this correct?

Right now, I have a lot on my hands, I think I cannot promise something before October . I could advance here and there but for something guaranteed to be delivered I need my semester to finish first :/

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sappelhoff avatar sappelhoff commented on September 22, 2024

What I get reading the comments there is that the goal now is to have a documented example that compares both RANSAC's in an isolated way

Yes, I think that's what #36 could do ... just compare the pyprep and autoreject RANSAC implementations with each other.

So, what is expected for 0.4 is a documented example of PyPrep RANSAC vs Autoreject RANSAC comparison (not the comparison of the whole packages). Is this correct?

Yep

Right now, I have a lot on my hands, I think I cannot promise something before October . I could advance here and there but for something guaranteed to be delivered I need my semester to finish first :/

okay! :-)

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sappelhoff avatar sappelhoff commented on September 22, 2024

https://pypi.org/project/pyprep/0.4.0/ 🎉 as discussed in #105 (comment)

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