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followers: 141.0 following: 13.0 repos: 36.0 gists: 0.0

Name: Sari Sabban

Type: User

Bio: Molecular biologist and biotechnologist, researching machine learning-based protein design, computational structural biology, and biomolecular simulations

Twitter: sarisabban

Blog: https://www.youtube.com/user/SariSabban

Sari Sabban's Projects

coreanalyse

This script points out if a protein's core has polar amino acids.

corerefine

This script generates a Resfile that allows better core packing of a protein.

deepphase

Protein Crystal Classification Using Machine Learning

diffusionmodel

Generic U-Net based diffusion model written in tensorflow

fragquality

Measures the RMSD for each fragment at each protein structure's position and plots the lowest RMSD fragment for each position

frags

Generate Fragment Picking and PSIPRED secondary structure prediction.

ilm_fm_backup

A script for download all episodes from my podcast ILM FM for backup

ilmbot

A Twitter bot for the twitter account of my podcast ILM FM

instamediaget

A small script that parses an instagram account and gets all the video or image URLs.

ircbot

A simple IRC bot that posts a notice when talked to

mediaget

To get the links for videos, images, or gifs from a website.

miramar

De novo cyclic protein polypeptide design using reinforcement learning.

pdbanalyse

A script that uses Machine Learning to analyse all protein structures in the Protein DataBank (PDB) database

pdbclean

A small script that cleans the PDB database

This script organises and moves PDB files after running the Rosetta Epigraft protocol to make it easy to search for only files with the correct size (150 amino acids or less) rather than look through all structures.

pose

A bare metal Python library for building and manipulating protein molecular structures

protlayers

This script calculates the different layers (Surface, Boundery, Core) of a protein then opens Pymol to highlight them.

protlstm

An LSTM neural network to generate novel protein sequences

protvr

Visualise a Protein in Virtual Reality

ramanet

Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure

refineassist

This script will calculate the solvent-accessible surface (SASA) for each amino acid within a protein and point out which amino acids are in the wrong layer.

renumb

Renumbers a PDB protein structure starting at residue 1 and chain A

resurf

This script generates a Resfile to be used to mutate a desgined protein's surface back to the original RCSB structure's surface.

rg

A small python script that calculates the Radius of Gyration (Rg) of a protein.

rmsd

Calculate the RMSD between two protein structures

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Sari Sabban's Projects

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