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Name: Sean Bresnahan
Type: User
Bio: Postdoc data scientist at the UT Houston MD Anderson Cancer Center | PhD in Molecular, Cellular and Integrative Biosciences from Penn State
Twitter: seantbres
Location: Tulsa, OK
Name: Sean Bresnahan
Type: User
Bio: Postdoc data scientist at the UT Houston MD Anderson Cancer Center | PhD in Molecular, Cellular and Integrative Biosciences from Penn State
Twitter: seantbres
Location: Tulsa, OK
Examining the role of transcription and post-transcriptional modifications on mediating intragenomic conflict in honey bees
This tutorial demonstrates best practices for processing whole genome sequence (WGS) and mRNA sequencing (mRNA-seq) reads for allele-specific transcriptomics analysis.
Supplementary information for Chapter 5 of "Molecular Mechanisms of Phenotypic Variation in Honey Bees" - a dissertation in Molecular, Cellular, and Integrative Biosciences by Sean T. Bresnahan
Replicating the bioinformatics and statistics pipelines for allele-specific expression analysis of ovary tissue from sterile and reproductive reciprocally crossed honey bees as described in Galbraith et al. (2016). PNAS. https://www.pnas.org/content/113/4/1020
A collection of handy shell & R scripts for general purpose bioinformatics / data science
Supplementary Materials for "Intragenomic conflict underlies extreme phenotypic plasticity in queen-worker caste determination in honey bees (Apis mellifera)"
Beyond conflict: intragenomic conflict predicts individual variation in altruistic behaviour.
A quick tutorial for local BLAST using a custom sequence database
Software for automated curation of barcode sequence databases for metabarcoding and metagenomics
Pipeline for QC, trimming, alignment, and transcript-level quantification of paired-end RNAseq data + concatenation of alignment metrics produced by Picard tools.
My website
Analysis of paired tumor-normal whole exome sequencing data generated in a pilot open-access study of participants in Texas.
Analysis of summer nurse & forager and winter honey bee fat body and flight muscle transcriptomes
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.