sbresnahan Goto Github PK
Name: Sean Bresnahan
Type: User
Bio: Postdoc data scientist at the UT Houston MD Anderson Cancer Center | PhD in Molecular, Cellular and Integrative Biosciences from Penn State
Twitter: seantbres
Location: Tulsa, OK
Sean Bresnahan's Projects
allele-specific-transcription-and-m6a
Examining the role of transcription and post-transcriptional modifications on mediating intragenomic conflict in honey bees
ast-tutorial
This tutorial demonstrates best practices for processing whole genome sequence (WGS) and mRNA sequencing (mRNA-seq) reads for allele-specific transcriptomics analysis.
dissertation-appendix-d
Supplementary information for Chapter 5 of "Molecular Mechanisms of Phenotypic Variation in Honey Bees" - a dissertation in Molecular, Cellular, and Integrative Biosciences by Sean T. Bresnahan
galbraith-2016-pnas-ase-replication
Replicating the bioinformatics and statistics pipelines for allele-specific expression analysis of ovary tissue from sterile and reproductive reciprocally crossed honey bees as described in Galbraith et al. (2016). PNAS. https://www.pnas.org/content/113/4/1020
generalpurposescripts
A collection of handy shell & R scripts for general purpose bioinformatics / data science
igc-cd-sm
Supplementary Materials for "Intragenomic conflict underlies extreme phenotypic plasticity in queen-worker caste determination in honey bees (Apis mellifera)"
igc-retinue
Beyond conflict: intragenomic conflict predicts individual variation in altruistic behaviour.
localblasttutorial
A quick tutorial for local BLAST using a custom sequence database
metacleaner
Software for automated curation of barcode sequence databases for metabarcoding and metagenomics
pe-rnaseq-workflow
Pipeline for QC, trimming, alignment, and transcript-level quantification of paired-end RNAseq data + concatenation of alignment metrics produced by Picard tools.
sbresnahan.github.io
My website
texascancergenomics
Analysis of paired tumor-normal whole exome sequencing data generated in a pilot open-access study of participants in Texas.
winter-honeybee-transcriptome
Analysis of summer nurse & forager and winter honey bee fat body and flight muscle transcriptomes
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