Comments (3)
Great questions! As for the first question, you can simply make the figure bigger with, say, figsize=(20, 20)
. This should spread things out.
As for the other question, congratulations, you found a bug! I will try to fix this issue in the next release (1.16.0).
Thanks for reporting the issues.
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FYI, the bug has been fixed in the 1.16.0-dev
branch. I will release the official version soon, but in the meantime you are welcome to try it out!
import dokdo
import matplotlib.pyplot as plt
%matplotlib inline
import seaborn as sns
sns.set()
qza_file = '/Users/sbslee/Desktop/dokdo/data/moving-pictures-tutorial/table.qza'
metadata_file = '/Users/sbslee/Desktop/dokdo/data/moving-pictures-tutorial/sample-metadata.tsv'
dokdo.clustermap(qza_file,
metadata=metadata_file,
normalize='clr',
hue1='body-site',
hue2='subject')
dokdo.clustermap(qza_file,
metadata=metadata_file,
normalize='clr',
flip=True,
hue1='body-site')
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Related Issues (20)
- `alpha_rarefaction_plot` apparently ignores 'N/A' values when plotting
- alpha and beta diversity without qiime file HOT 7
- correlation analysis HOT 11
- Plot options for `beta_2d/3d_plot` and `taxa_abundance_box_plot` methods HOT 13
- Implementing differential abundance analysis HOT 2
- dokdo `beta_parallel_plot` issue HOT 1
- taxa_abundance_bar_plot issue HOT 1
- Add the rank abundance curve plot
- exclude "others" from relative abundance and plot HOT 3
- ModuleNotFoundError: No module named 'skbio' HOT 8
- ImportError: libhdf5_cpp.so.200: cannot open shared object file: No such file or directory HOT 2
- Select samples for PCoA HOT 3
- Add taxon name in the pcoa biplot HOT 1
- How to plot many species on a bar graph HOT 8
- [taxa_abundance_bar_plot] Customizing bar colors with using 'Seaborn palette' or 'Matplotlib colormap' HOT 2
- [taxa_abundance_box_plot] Deletion of notation of species not observed in samples HOT 2
- import process issue HOT 5
- ImportError: cannot import name 'diversity_lib' HOT 2
- KeyError: "['merged'] not in index", after running "dokdo.denoising_stats_plot" HOT 2
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