schellt Goto Github PK

followers: 6.0 following: 3.0 repos: 12.0 gists: 0.0

Name: Tilman Schell

Type: User

Company: LOEWE-TBG

Location: Frankfurt am Main

Tilman Schell's Projects

autoautoaug

Execute Augustus' autoAug.pl automatically if no --singleCPU option is set.

autotrim

Trimming (overrepresented k-mers from) multiple fastq files

backmap

Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size

The genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS sequencing reads.

figtree

Automatically exported from code.google.com/p/figtree

fqs-tools

FastQ Screen like tools

maker-functional

Adjustment of MAKER's functional annotation scripts

mgse

Mapping-based Genome Size Estimation

msat-loci-identification

De novo microsatellite loci identification pipeline as used in Schröder et al. (2021)

rails

RAILS and Cobbler

wtdbg2-racon-pilon

Wrapper for overlap assembly of long reads and polishing

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