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2019-msc-project

code for 2019 msc cog neurosci project

da-for-ni

materials for "data analysis for neuroimaging" module

dada-engine

This is a clone of the code contained on http://dev.null.org/dadaengine

dafni

Materials and site for "data analysis for neuroimaging" course

datavis-data

data samples for datavis testing

doc-test

dockerize-analysis

build a container from which EH's analysis code (and others) can be run, without relying on windows/mac compatibility

edffi

experimental design for functional imaging module materials

effective-geo

quick (re)test of geo coding in docker container / leaflet.js

faceapp

deploying a julia/genie.jl web app to heroku

fictional-dollop

testing some ideas during dafni lab classes

fitmnread-charts

piecewise linear fitting of commonly used MNread acuity chart data

fmri_roi_analysis_tool

An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of: T2* value and temporal signal to noise ratio.

fsl-glm

setting up fsl glm for event-related experiments and studies in which there are latent (computational) model variables we want to track

generative-art

trying out generative art with Luxor.jl

gramm

Gramm is a powerful visualization toolbox which allows to quickly create complex, publication-quality figures in Matlab, and is inspired by R's ggplot2 library by Hadley Wickham. As a reference to this inspiration, gramm stands for GRAMmar of graphics for Matlab.

hands-on-brain-data

getting started with data analysis with #julialang and sample MRI data

henry-rd-bakery

Henry Road Bakery book (started during COVID-19 madness)

julia-codespace-test

testing julia w/ github code spaces

learningmatlab

Introduction to Matlab Programming

linearregressiondemo

jupyter notebook with interactive linear regression demo

make-wb-20mph

blogdown site about traffic and making wb a 20mph zone

make-wb-20mph-code

code for blog posts

manifold

looking at cortical surface data

matlab-2019

some code that I wrote during the matlab 2019 course.

matlab-catchup

Documents and some code snippets for Matlab catch-up session

megeyehs-code

matlab / bash code for looking at images, integrating with fieldtrip etc

mgl

A suite of mex/m files for displaying psychophysics stimuli

minimal-mistakes

A responsive Jekyll theme with clean typography and support for large full page images.

mr-sequence-diagrams

Draw MR Sequence Diagrams for LaTeX / MetaPost