Related Issues (20)
- Implement sheet handling in tsv_to_excel.R script
- Make tsv_to_excel.R more generic
- Add installation instructions for all required tools
- Add option to filter by position or for specific variants instead of gene name HOT 1
- Add a script to generate screenshots for visual validation HOT 1
- Feature request: Statistics for the filtered table HOT 1
- Bug: Check Input files format in replace GT script
- long options handling not implemented for all in filter_phenotypes.sh
- Feature request: Configurable delimiters in filter_variants.sh
- Add an argument to pass arguments to the replace_script in the filter_variants.sh script
- Feature request: Add version information of other tools to logging
- Feature request: Add links to documentation, repository and help email
- The replace_gt_with_sample.sh script currently has no help message
- Add a sheet with Meta information to the XLSX output HOT 2
- Add an argument to set the separator in the replace_gt_with_sample.sh script and change default
- Implement filter_phenotypes.sh in filter_variants.sh
- The replace_gt_with_sample.sh script currently has no semantic versioning
- add script name to version echo in all script
- tsv_to_excel.R location is currently hardcoded in filter_variants.sh
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