Data subsetting method about anndata HOT 8 CLOSED

What do you mean beyond subsetting via adata[my_cells] where my_cells could be any valid numpy indexing object?

from anndata.

Do we have this method now? "subsetting via adata[my_cells] where my_cells could be any valid numpy indexing object"

from anndata.

Does adata[my_cells] not work for you?

from anndata.

It worked for me, thanks

from anndata.

Does anyone know why adata[my_cells,:] stopped working?

from anndata.

@brianpenghe, could you elaborate on that? A traceback and versions would be useful.

from anndata.

@brianpenghe, could you elaborate on that? A traceback and versions would be useful.

It seems that subsetting an anndata used to work by two methods:
adata[my_cells,:]
adata[my_cells]

But it seems that recently only the second method works, after I've already subsetted the anndata once.

from anndata.

Hmm. I can't immediately reproduce that. Could you open a new issue and provide some more info there? Things like version numbers and the traceback. It'd be especially helpful if you could reproduce this with some randomly generated data or one of the example datasets.

from anndata.