Comments (7)
update:
The 'dtype' is missing in _read_text()
return AnnData(data,
obs={'obs_names': row_names},
var={'var_names': col_names})
Similarly, in transpose()
and copy()
,etc, it's missing too
from anndata.
It should be present in _read_text
, right and the other reading function! That's a bug. Would you mind making a pull request?
It shouldn't be present in transpose
and copy
, though.
from anndata.
Sure. I will do that.
But I noticed for the function transpose() , if I donβt add dtype = float64, after read_text() and transpose, it will be reverted to float32 again . I guess there must be something else that needs to be fixed.
from anndata.
Hi Alex,
Thanks again for developing this amazing package for python community. I was wondering if you have any updates on the data type issue. I'll be happy to pull request if you could let me know besides reading functions all the other functions I should look at.
Many thanks!
Best,
Huidong
from anndata.
Sorry for being so slow, @huidongchen , it's been fixed for copy (989f13e) and for transpose (b7dca41).
The PR for the read functions will only affect the read functions themselves. Should be very straight forward. Thank you!
from anndata.
Hi Alex @falexwolf thanks a lot for updating other relevant parts. I will make a PR shortly.
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Fixed via #81.
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Related Issues (20)
- Does anndata.raw can be automatically modified after define it?
- Make the call to `_check_uniqueness()` optional in `_init_as_actual()` (and `__init__()`) HOT 1
- `concat_on_disk` outer join
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- Gpu failing because of `cp.full` with `np.nan`
- Add path parameter to write_zarr method HOT 8
- GPU writing HOT 1
- GPU concatenation HOT 1
- TypeError when writing string columns to h5ad HOT 1
- ad.read_zarr doesn't return `.uns` nor `.obsm` HOT 3
- read_csv irmproperly parses first column if wrapped in quotes and has comma in string HOT 2
- i cannot read the h5ad object in a conda environment HOT 1
- Policy for format updates HOT 1
- `KeyError` on Flask app using `pyinstaller` with `setuptools_scm` HOT 1
- `dask` `2024.8.0` breaks with `scipy.sparse.{csr,csc}` HOT 1
- backed="r" is leaking memory HOT 1
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