Comments (4)
jeff-regier
commented on August 16, 2024
1
Yes, that might work. Maybe call it Trainer, with train as a method.
from scvi-tools.
Edouard360
commented on August 16, 2024
Would creating a Train class also work ? Where we would inherit a loop method, ect... ?
I feel like a single function with flags would be less readable.
from scvi-tools.
Edouard360
commented on August 16, 2024
I went from ~180 to ~100 lines in branch trainer, in train.py which includes modifications from branch refactoring therefore aiming at solving also #76 and #75.
Do you agree with the Trainer class design ? (which might be refined before the pull request)
from scvi-tools.
jeff-regier
commented on August 16, 2024
Yes, looks like a nice improvement.
from scvi-tools.
Related Issues (20)
- Remove `scvi.data.cellxgene`
- is there any way to sepcific the number of workers when using scvi in R ?
- Bug using "scvi-tools/tabula-sapiens-heart-stereoscope" hugging face scvi model - scvi-tools 1.0.4 HOT 1
- Enable custom splits in `DataSplitter` HOT 1
- Transfer mrVI to external
- ImportError: cannot import name 'sparse_csc_tensor' from 'torch' HOT 2
- Assess whether we should deprecate more `scvi.data` functions
- Enable custom dataloader usage with autotune
- Deprecate `scvi.train.SaveBestState` and `save_best` argument
- Release scvi-tools 1.1.2
- Enable checkpointing with autotune
- multiVI fails with invalid tensor HOT 7
- scvi ignoring GPU because of jax HOT 6
- Allow scArches to extend categorical covariates
- ParserError: Error tokenizing data. C error: Expected 1 fields in line 52, saw 3 HOT 1
- Add feature to generate coordinates for `synthetic_iid` HOT 1
- Failing to train on multiple GPUs in jupyter notebook HOT 4
- TypeError with model.train() using R reticulate
- AttributeError: module 'numpy' has no attribute 'str HOT 2
- Transfer veloVI to external
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from scvi-tools.