Giter VIP home page Giter VIP logo

Comments (5)

giovp avatar giovp commented on June 12, 2024

Another one could be the Ripley's K value, see these papers:
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003808
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0080914

from squidpy.

giovp avatar giovp commented on June 12, 2024

Couple notebooks to evaluate ripley values over coordinates or graph in #19

from squidpy.

giovp avatar giovp commented on June 12, 2024

Potentially interesting: https://nbviewer.jupyter.org/github/pysal/pointpats/blob/master/notebooks/Quadrat_statistics.ipynb

from squidpy.

giovp avatar giovp commented on June 12, 2024

@AnnaChristina , @ilibarra wrote this on MM:
related to the assortativity metric:

CellOracle computes two metrics: within module degree (z) and participation coefficient (P). Maybe worth take a look if this is useful on top or instead of assort.
They do this for each cluster or cluster pair, so you would have a point in the (x, y) space based on that.
https://www.biorxiv.org/content/10.1101/2020.02.17.947416v3.full

Maybe interesting to look into that? Not sure really

from squidpy.

giovp avatar giovp commented on June 12, 2024

@AnnaChristina Malte just posted this on MM:
Also: various network summary statistics used to identify node roles:
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0103733

from squidpy.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.