Giter VIP home page Giter VIP logo

Comments (7)

ivirshup avatar ivirshup commented on June 12, 2024

Does the refactor of the scatterplot module include moving the code for spatial plotting out of sc.pl.embedding?

from squidpy.

giovp avatar giovp commented on June 12, 2024

Not sure what's @flying-sheep opinion on this. So far, pl.spatial is essentially a wrapper of sc.pl.embedding with a couple of additions:

  • function to process images and plot them
  • use of "circles" (from PatchCollection) instead of "scatter"

from squidpy.

flying-sheep avatar flying-sheep commented on June 12, 2024

Yeah, we added a bit more to what’s already too many options. No idea how to nicely deprecate and replace it by something better, and that didn’t change by those additions.

I think the best would be to extract the image-below-things to sc.pl.spatial, but leave the option to do circles instead of markers.

from squidpy.

ivirshup avatar ivirshup commented on June 12, 2024

I don't think those options have been documented in a release. Can we just not document them for the regular embedding functions?

Really, a lot of those plotting functions could be more modular.

from squidpy.

flying-sheep avatar flying-sheep commented on June 12, 2024

Yeah. If nobody picks up the slack until I’m done with my thesis, I’ll do it after. But it’s really a thing we need.

from squidpy.

ivirshup avatar ivirshup commented on June 12, 2024

Could we make sure that those arguments don't get documented in a release? Also, I think the doc builds have been broken since the wishbone PR. It might be worth asking read the docs to enable doc builds for our PRs.

from squidpy.

giovp avatar giovp commented on June 12, 2024

closed with #437

from squidpy.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.