Related Issues (20)
- sq.pl.spatial_scatter return_ax = True not working
- error when sq.im.segment HOT 2
- NaN value when importing Visium dataset HOT 9
- EuroPython talk that can give feature insights to SquidPy HOT 2
- Visium analysis with missing highres images
- Issue reading visium data when the GEX file is a matrix
- dated napari tutorial/documentation HOT 1
- pl.ligrec Value Error when following seqFish tutorial notebook HOT 4
- Xenium tutorial code does not work HOT 1
- Using squidpy.pl.spatial_segment on Xenium data
- The Kernel crashed while executing code in the current cell HOT 1
- Ripley L measure with n_observations
- add zarr.zip to adata HOT 1
- KeyError: '72' when reading in Nanostring CosMx data HOT 4
- Converting spatial seurat dataset to anndata HOT 2
- Should the raw H&E image (.tif) and the image stored in anndata be in the same orientation?
- sq.gr.ligrec crashing kernel/script with VisiumHD (>100k spots/spatial barcodes) - Squidpy incompatible with single-cell level spatial technologies? HOT 3
- Extracted cropped spot images HOT 1
- Clustering according to image features
- sort_order for pl.spatial_scatter
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from squidpy.