Comments (2)
merge into #64?
from squidpy.
maybe leave as is for now, tools.py mostly contains functions for feature extraction and is thus a bit different from the functions in _utils
from squidpy.
Related Issues (20)
- Spatial network CSR matrix seems not symmetrical HOT 2
- Geographically weighted regression (GWR) for gene-gene correlation
- Do we need to normalization and scaling before calculating spatial autocorrelation?
- Cannot load Visium_FFPE_Mouse_Brain. Error: HTTP Error 403: Forbidden
- Cannot load Visium_FFPE_Mouse_Brain. Error: HTTP Error 403: Forbidden
- Cannot load Visium_FFPE_Mouse_Brain,Visium_FFPE_Human_Normal_Prostate. Error: HTTP Error 403: Forbidden
- Parameters of squidpy.gr.spatial_neighbors() HOT 1
- Comparisons between groups of samples HOT 5
- Memory Consumption Issue in CosMx.
- Any existing effort to port squidpy functionalities to R?
- Analysing 3D data
- Include more options for niche definitions HOT 1
- Allow for spatial perturbation screen analysis HOT 6
- sq.pl.spatial_scatter return_ax = True not working
- error when sq.im.segment HOT 2
- NaN value when importing Visium dataset HOT 9
- EuroPython talk that can give feature insights to SquidPy HOT 2
- Visium analysis with missing highres images
- Issue reading visium data when the GEX file is a matrix
- dated napari tutorial/documentation HOT 1
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from squidpy.