Comments (1)
before we forget, @Koncopd notices that sometimes spot coordinates are a bit off. In other words, if there are 300 rows of spots in the tissue, the actual row coordinates for all spots in the same row are not the same, but can be off by 1 unit. This makes it difficult to compute distances in a consistent way, and thus adopt the radius idea also for visium
from squidpy.
Related Issues (20)
- sq.pl.spatial_scatter return_ax = True not working
- error when sq.im.segment HOT 2
- NaN value when importing Visium dataset HOT 9
- EuroPython talk that can give feature insights to SquidPy HOT 2
- Visium analysis with missing highres images
- Issue reading visium data when the GEX file is a matrix
- dated napari tutorial/documentation HOT 1
- pl.ligrec Value Error when following seqFish tutorial notebook HOT 4
- Xenium tutorial code does not work HOT 1
- Using squidpy.pl.spatial_segment on Xenium data
- The Kernel crashed while executing code in the current cell HOT 1
- Ripley L measure with n_observations
- add zarr.zip to adata HOT 1
- KeyError: '72' when reading in Nanostring CosMx data HOT 4
- Converting spatial seurat dataset to anndata HOT 2
- Should the raw H&E image (.tif) and the image stored in anndata be in the same orientation?
- sq.gr.ligrec crashing kernel/script with VisiumHD (>100k spots/spatial barcodes) - Squidpy incompatible with single-cell level spatial technologies? HOT 3
- Extracted cropped spot images HOT 1
- Clustering according to image features
- sort_order for pl.spatial_scatter
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from squidpy.