Comments (2)
When you restarted RStudio via Docker, did you run the following sequence?
export UID=$UD docker-compose up -d
Also, the following should work as well
UID=$UID docker-compose up -d
The docker image has user-level permissions and the export UID=$UID or the UID=$UID portions of the commands above pass the current user is to the image to properly map the permissions between host and container. My best guess is you ran without doing the export first. If you open a terminal up and then
cd /home/rstudio/seattle_flu touch test_permissions
If the touch command fails, it is the UID issues.
If the above commands succeeds, then the container permissions are not the issue. In that case, it could be the project file has the wrong permissions. I would check the project by doing the following on your host(not in the container). The first command could have wrong path but basically navigate to your git checkout through ssh.
cd ~/incidence-mapper/u/dbViewR ls -al
If the project file is not owned by you, run the following. Replace user with the your linux user name. I usually use the one from the ls -al output.
sudo chown <user>:<group> dbViewR.Rproj
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Yep, forgot export UID=$UD docker-compose up -d
.
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Related Issues (20)
- make selectFromDB and smoothModel understand flu_shot = (yes,no, dontknow) HOT 1
- investigate priors in smoothModel by looking at posterior distributions of non-existent sites
- Census tract should be a string HOT 2
- adjust for age in latentField models HOT 1
- explore "health reporting areas" as human-readable shapenames that work across counties HOT 1
- add concept of flu_season and interactions with season
- Simulated data and real data workflow have diverged too far and that affects testing HOT 1
- docker-compose up for api-service may failed and exited w/ code 127 HOT 2
- DockerFile.RbuildEnv failed with: The command '/bin/sh -c Rscript -e "devtools::install_version('forecast', version = '8.9', repos = "http://cran.us.r-project.org")" && rm -rf /tmp/*' returned a non-zero code: 1 HOT 5
- Simplify dbViewR::selectfromDB.R lines 84-101 HOT 1
- HTTPS support for the web API HOT 10
- appendCatchmentModel should have a site-location interaction term
- Bug in expandDB: broken handling of nested geographies
- latentFieldModel needs to include CDC_ILI in modeled field if used
- introduce more specific model types in incidenceMapR
- likely bug in priors for spacetime component
- Docker image out of date? HOT 1
- Install local incidence-mapper R packages during docker build? HOT 1
- Specific user access
- Development Environment doesn't support multiple users
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