Comments (4)
I didn't see that property. That makes perfect sense to grab it from definition if it is specified there since it is more scalable to future model types
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turns out it wasn't quite that simple, since all models make smooth/observed
models. Anyway, I'll put in a pull request soon as I think I have worked out what we need going forward on the branch. But it will break some assumptions in the server--we can talk next week. But thanks for getting it up so we can see what it looks like!
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saveModel
in general has a lot of code duplication and confusing flow. Clean up the whole thing when we get to it.
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Hooking up new model types, as will be required on branch https://github.com/seattleflu/incidence-mapper/tree/famulare/flu-vax-efficacy is basically impossible with the current modelServR::saveModel design, which assumes two model types. Fixing saveModel to be more extensible and maintainable is necessary, and merging in flu-vax-efficacy models is a good prompt to do so. However, the viz can't do anything with these models right now, and they are fast to run, so I don't need this functionality until after clean-alpha-deployment is finished.
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Related Issues (20)
- make selectFromDB and smoothModel understand flu_shot = (yes,no, dontknow) HOT 1
- investigate priors in smoothModel by looking at posterior distributions of non-existent sites
- Census tract should be a string HOT 2
- adjust for age in latentField models HOT 1
- explore "health reporting areas" as human-readable shapenames that work across counties HOT 1
- add concept of flu_season and interactions with season
- Simulated data and real data workflow have diverged too far and that affects testing HOT 1
- docker-compose up for api-service may failed and exited w/ code 127 HOT 2
- DockerFile.RbuildEnv failed with: The command '/bin/sh -c Rscript -e "devtools::install_version('forecast', version = '8.9', repos = "http://cran.us.r-project.org")" && rm -rf /tmp/*' returned a non-zero code: 1 HOT 5
- Simplify dbViewR::selectfromDB.R lines 84-101 HOT 1
- HTTPS support for the web API HOT 10
- appendCatchmentModel should have a site-location interaction term
- Bug in expandDB: broken handling of nested geographies
- latentFieldModel needs to include CDC_ILI in modeled field if used
- introduce more specific model types in incidenceMapR
- likely bug in priors for spacetime component
- Docker image out of date? HOT 1
- Install local incidence-mapper R packages during docker build? HOT 1
- Specific user access
- Development Environment doesn't support multiple users
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