API bugs about incidence-mapper HOT 10 CLOSED

This works too:

{
  "model_type": "inla",
  "observed": [
    "residence_cra_name",
    "site_type",
    "pathogen",
    "flu_shot",
    "sex",
    "encountered_week"
  ],
  "pathogen": [
    "all"
  ]
}

from incidence-mapper.

@devclinton -- thanks for setting up the swagger page :)

Just a heads up that the provided example query_model is currently broken

{
  "model_type": "inla",
  "observed": [
    "encountered_week",
    "flu_shot",
    "PUMA5CE",
    "sampling_location"
  ],
  "pathogen": [
    "all"
  ]
}

{   "error": "Could not find the specified id" }

from incidence-mapper.

But this query returns valid csv and json

{
  "model_type": "inla",
  "observed": [
    "residence_puma",
    "site_type",
    "pathogen",
    "flu_shot",
    "sex",
    "encountered_week"
  ],
  "pathogen": [
    "all"
  ]
}

from incidence-mapper.

The one that failed is the biggest CSV, (and also most likely to have a nan or inf value, which shouldn't matter, but still).

from incidence-mapper.

I also haven't found an inla_latent call that works. I believe each of the above models should have a latent partner, and I've tried to reproduce what I can see from within the modelDB.tsv, but haven't gotten an inla_latent query to work yet.

Example I think should work:

{
  "model_type": "inla_latent",
  "observed": [
    "residence_cra_name",
    "pathogen",
    "encountered_week"
  ],
  "pathogen": [
    "all"
  ]
}

possibly without "observed":"pathogen"

Returns

  "error": "Could not find the model with the id dcf443667ceb4909a3163864f720309d from query string: {\"model_type\": \"inla_latent\", \"observed\": [\"residence_cra_name\", \"pathogen\", \"encountered_week\"], \"pathogen\": [\"all\"]}"

from incidence-mapper.

I am going to take a look at this evening/ tomorrow. I suspect this is partially some of the error handling. My guess is I stream the model output before it is ready. That would make it appear successful but possible empty or truncated. I have an idea how to handle this.

On the human readable name, I need to make some updates. I think now the pathogen is most likely missing.

I will first start with latent. I know I had tested an older model that was a latent but that is before the recent updates

from incidence-mapper.

Also, as a side note, thanks for this list. If we can possibly maintain a list of models I would like to add a production system sanity test to catch any issues that arise can be caught early once all this is resolved

from incidence-mapper.

Adding to this, (unless I'm doing something wrong), this query is also returning an error:

{
  "model_type": "inla",
  "observed": [
    "residence_puma",
    "encountered_week"
  ],
  "pathogen": [
    "all"
  ]
}

{ "error": "Could not find the model with the id c1ccad065fb9028d502f42bfc3c65974 from query string: {\"model_type\": \"inla\", \"observed\": [\"residence_puma\", \"encountered_week\"], \"pathogen\": [\"all\"]}" }

from incidence-mapper.

I have tested the following models and they are working now

{
  "model_type": "inla_latent",
  "observed": [
    "residence_cra_name",
    "pathogen",
    "encountered_week"
  ],
  "pathogen": [
    "all"
  ]
}

{
  "model_type": "inla_observed",
  "observed": [
    "residence_puma",
    "encountered_week"
  ],
  "pathogen": [
    "all"
  ]
}

{
  "model_type": "inla_observed",
  "observed": [
    "residence_cra_name",
    "site_type",
    "pathogen",
    "flu_shot",
    "sex",
    "encountered_week"
  ],
  "pathogen": [
    "all"
  ]
}

I am tested other models
You can check available models at

http://40.112.165.255/v1/ui/#!/generic95model/seattle_flu_incidence_mapper_generic_models_read_all

I still need to update example. Next public update the Swagger will have a working default example as well

from incidence-mapper.

I believe this is resolved. Closing now after the last API update

from incidence-mapper.