segatalab Goto Github PK
Name: Segata Lab
Type: Organization
Bio: The computational metagenomics lab at the Dep. CIBIO, University of Trento
Location: Trento
Name: Segata Lab
Type: Organization
Bio: The computational metagenomics lab at the Dep. CIBIO, University of Trento
Location: Trento
This repo contains scripts for reproducing results reported in the calculus study, Lena et al., 2021
Public repository for cFMD - curatedFoodMetagenomicData
Set of utilities on sequences and BAM files
Conversion software tool for producing both annotation and tree files for GraPhlAn
Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publication.
Object caller for stochastically dependent and independent effect-size and meta-analysis of correlations in Python
A python package for assisting to reconstruct time-tree at the strain level using contemporary and ancient metagenomes.
MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.
Code available for Marsha et al. 2021 - "Reconstruction of ancient microbial genomes from the human gut"
PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination
Scripts for the ViromeDB project
ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichment score for each virome. The score is calculated with respect to the expected prokaryotic markers abundances in reference metagenomes
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.