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3d_prints

STL files for 3D printing

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics_docker_files

Docker files for building bioinformatics working environments

data_tutorials

iPython notebooks for workshops

micro_bit_weather_bit

Add on weather station module for the micro:bit ecosystem.

pi-timelapse

Time-lapse app for Raspberry Pi computers.

pybioutils

Python bioinformatics utils

pycopy-lib

Standard library of the Pycopy project, minimalist and light-weight Python language implementation

scram

Fast and simple small RNA read alignment and visualisation

scram2

Updated and integrated small RNA exact match aligner and visualisation pipeline

scram2plot

Python scripts for plotting scram2 alignments

scram2wig

Convert scram2Aligner output CSV files to WIG files showing mean coverage at each position. These can be loaded into GBROWSE sessions.

scram_docker

The scram aligner, scram_plot plotting package & Jupyter Notebook on the minimal Miniconda base

scram_plot

scram2_plot: generate profiles and interactive scatter plots from scram2 alignments

scram_worked_example

scram_worked_example

scramaligner

The scramAligner pipeline is designer to align small RNA reads to references sequences with no mis-matches. There is no requirement for reference index building. The pipeline is ideally suited to analysis of siRNAs generated from transgenes or viruses. Scripts for visualising alignments are also provided

scrampkg

scramtrimmer

Small RNA read adaptor trimmer - fast, trims NEXTflex reads in one step, compressed FASTQ input and output

sirnaenricher

Identify genomic regions with siRNA enrichment

thingsboard.github.io

Documentation repository