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adventofcode2022

adventofcode2023

autoflow-omicsdatahandling

Big Data Omics handling for campaign and autonomous science

battleship_game

battleship game on Python

cameo

cameo - computer aided metabolic engineering & optimization

cobrapy

COBRApy is a package for constraint-based modeling of biological networks

coursera-algorithms

a bit of Java code for Robert Sedgewick's coursera course (https://www.coursera.org/course/algs4partI)

data_structures

Various data structures implementation

dl_course

driven

Data-Driven Constraint-based analysis

escher

Build, view, share, and embed pathway maps.

file_uploader

gf-vae

A Flow-based Variational Autoencoder for Molecule Generation

gnomic

A grammar and Node.js package for describing microbial genotypes and phenotypes.

haskell_practice

huffman

C++ Huffman code implementation

hyena-dna

Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

kaggle-sber

kaggle-seizure

lint

C++ big integer type class

memote

memote – the genome-scale metabolic model test suite

ml_coursera

IPython Notebooks for Coursera machine learning course

mmvae

Multimodal Mixture-of-Experts VAE

moflow

MoFlow: an invertible flow model for generating molecular graphs

multimodal-vae-public

A PyTorch implementation of "Multimodal Generative Models for Scalable Weakly-Supervised Learning" (https://arxiv.org/abs/1802.05335)

notion-burndown

Generate burndown chart from Notion database

openms

The codebase of the OpenMS project

paper_template

An Overleaf template for an initial journal submission and a preprint

paramfittorchdemo

How to use pytorch to fit parameters of differential equations

pathway-vis