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alpine-bioperl

Bioperl 1.7.7 containers based on alpine linux

aws.alpine

aws.canu

canu for AWS

aws.trinityrnaseq

awsdemo

bbtools

BBTools is a suite of fast, multithreaded bioinformatics tools designed for analysis of DNA and RNA sequence data.

bowtie2

bowtie2 - Fast and sensitive read alignment, build with bioconda

bwa

The BWA v0.7.17 read mapper, build from bioconda

cafe

Computational Analysis of gene Family Evolution (CAFE)

canu

openjdk:8 based release of CANU, a PacBio assembler

docker.mrbayes

docker.rstudio-deseq2

ecsdemo-crystal

Part 4 of a 4 part ECS Workshop

ecsdemo-frontend

ecsdemo-nodejs

Part 3 of a 4 part ECS workshop

ecsdemo-platform

Phase 1 of a 4 part ECS workshop

hello-world

maarjam_for_qiime2

MaarjAM database for studies on the diversity of arbuscular mycorrhizal fungi (Glomeromycota), formatted for Qiime2 (v2023.5)

mrbayes

MrBayes, a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models.

pilon

Docker based on bioconda distribution (v.1.23), with fixed memory issue

qiime_maarjam

Qiime v1.9 formatted MaarjAM database of Arbuscular Mycorrhizal Fungi

qiime_scripts

Home made scripts to run qiime workflows

r.qiime_maarjam

A semi-automated protocol to get Qiime-formatted MaarjAM database of Arbuscular Mycorrhizal Fungi

r_scripts

a place to store my R scripts..before get lost..

rnnotator

Rnnotator is an automated software pipeline that generates transcript models by de novo assembly of RNA-Seq data without the need for a reference genome.

samtools

SAMtools and BCFtools (v1.10) for manipulating next-generation sequencing data, from bioconda

testproject

transdecoder

TransDecoder identifies candidate coding regions within transcript sequences.

usaregithub

Manuale per l'uso di GitHub