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amountain

Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach

applicable

Quantify extrapolation of new samples given a training set

appliedpredictivemodeling

:exclamation: This is a read-only mirror of the CRAN R package repository. AppliedPredictiveModeling — Functions and Data Sets for 'Applied Predictive Modeling'. Homepage: http://appliedpredictivemodeling.com/

aroma.affymetrix

🔬 R package: Analysis of Large Affymetrix Microarray Data Sets

attachment

Tools to deal with dependencies in scripts, Rmd and packages

autoplotly

Automatic Generation of Interactive Visualizations for Statistical Results

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

bigheat

A series of functions that allow the visualisation of large heatmaps

bioseq

A Toolbox for Manipulating Biological Sequences in R

broom.helpers

A set of functions to facilitate manipulation of tibbles produced by broom

cancermirnome

CancerMIRNome - an interactive analysis and visualization database for miRNome profiles of human cancer

cdk46_expression_dependency

The code and data for generating Figure 3e and extended Figure 3b for manuscript "Distinct CDK6 complexes determine tumor cell response to CDK4/6 inhibitors and degraders".

clbn

clbn mutant vs. wildtype microarray analysis

clinker

Gene cluster comparison figure generator

closure

Tools to create and manipulate closures

cnvs

coexpressionpatterncomparison

Scripts to compare co-expression patterns in genomic regions, for phenotypes

cohortdiagnostics

An R package for performing various cohort diagnostics.

comethyl

An R package for weighted region comethylation network analysis

copdsubtype

corlevelplot

Visualise correlation results and test significancies of these

cosinor2

Extended Tools For Cosinor Analysis Of Rhythms

ctdpathsim

CTDPathSim: Cell line-tumor deconvoluted pathway-based similarity in the context of precision medicine in cancer

decoupler

An R package to decouple gene sets and statistics of functional genomics tools

deplink

Compares the genetic/epigenetic features between cancer cell lines with different dependencies of a gene set (signature)

diabetes-metabolic-syndrome-and-obesity-targets-and-therapy

Diabetes, Metabolic Syndrome and Obesity: Targets and Therapy/Supplementary data

did_multiplegt

Estimation in sharp Difference-in-Difference designs with multiple groups and periods

dnf

Drug Network Fusion: Data integration from multiple drug information layers

drug_susceptibility_collection

A snakemake pipeline to generate the transcriptomic signatures of drug susceptibility used in beyondcell

easycsv

An R package for easy data loading from multiple tables