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Computational Biologist, Polyglot

Shashank Pritam's Projects

bein icon bein

Miniature LIMS and workflow manager for bioinformatics

biobear icon biobear

Work with bioinformatic files using Arrow, Polars, and/or DuckDB

bioinfo-notebook icon bioinfo-notebook

🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.

fairy icon fairy

alignment-free coverage calculation for metagenomic binning >100 times faster

flahmm icon flahmm

FlaHMM: unistrand flamenco-like piRNA cluster prediction in Drosophila species using hidden Markov models

hypertda icon hypertda

Piece-wise Linear curves converted to point-clouds, analysed with Persistent Homology, represented as HyperGraphs.

te-invasion-simulations icon te-invasion-simulations

Software and supporting files for simulation modeling of TE invasion into Drosophila-like genomes and the evolution of small RNA Mediated repression. Associated manuscript in GBE (Kelleher, Azevedo and Zhang, 2018).

tuftize_markdown icon tuftize_markdown

You have got Markdown files? Want to see a Tufte style .pdf or .html of it? Well, try this.

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