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adatiss

arf

Differential Ribosomal heterogeneity Prediction through Ribosome Profiling generated rRNA fragments and their Proximity to Ribosomal Proteins

autoimpute

AutoImpute : Autoencoder based imputation of single cell RNA-seq data

bioconda-recipes

Conda recipes for the bioconda channel.

ckg

Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph

codon_tasep

simulate TASEP model with codon-specific elongation rates

deepshape

For the estimation of Isoform-Level Ribosome Abundance and Distribution Accurately which needs Ribo-seq data only.

dragonstar2019

frame-shift-detector

integrativenetworkmap

ixnos

Neural network regression model of translation elongation rate, with DP algorithm to optimize fast coding sequences under model

jamm

JAMM Peak Finder for Sequencing Datasets

kubegene

KubeGene - A turn-key Genome Sequencing workflow management framework

lncrnakb

Scripts for analyzing data displayed and deposited on the long non-coding RNA knowledgebase (lncRNAKB)

ml-nlp

此项目是机器学习(Machine Learning)、深度学习(Deep Learning)、NLP面试中常考到的知识点和代码实现，也是作为一个算法工程师必会的理论基础知识。

myscrna-seq

nativernaseqcomplextranscriptome

Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"

ngs-data-analysis

phylocsfpp

PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF files with PhyloCSF and confidence scores.

promise

PROMISE is a distributed pipeline to detect post-translation modification on Mass Spectrometry data. The pipeline is solely for academic research, non-commercial or educational purposes; for other uses, please contact Weizmann institution.

protac-rl

proteogenomics_python

python scripts for proteogenomics analysis

python-cookbook

Code samples from the "Python Cookbook, 3rd Edition", published by O'Reilly & Associates, May, 2013.

rasflow

RNA-Seq analysis workflow

riboanalyzer

The RiboAnalyzer is a python package used for downstream analysis of ribosome profiling data

ribocode

release version

ribominer

a toolset for mining multi-dimensional features of the translatome with ribosome profiling data

riboseq

ribosome_diricore_pipeline

roca

A hidden role of rocaglamide A in translation elongation