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anvio

An analysis and visualization platform for 'omics data

bamm

A program for multimodel inference on speciation and trait evolution

bamm-1

Metagenomics-focused BAM file manipulation

blobtools

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

braker

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes

chiron

A basecaller for Oxford Nanopore Technologies' sequencers

dnapipete

dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).

figtree

Automatically exported from code.google.com/p/figtree

genomethreader

GenomeThreader gene prediction software.

genomicscourse

For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics

glimmer-mg

Gene prediction in metagenomic sequences using Glimmer augmented by phylogenetic classification and clustering

hello-algorithm

🙈🙉🙊 本项目包括：1、我写的三十万字图解算法题典 2、100 张 IT 相关超清思维导图 3、100 篇大厂面经汇总 4、各语言编程电子书 100 本 5、English version supported !!! 🚀🚀 国人项目上榜首不易，右上角助力一波！干就对了，奥利给 ！🚀🚀

hgtector

HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.

l1_project

noisecancellingrepeatfinder

Noise-Cancelling Repeat Finder

phyltr

Phylogenetic Analysis of Long Terminal Repeat Retrotransposons

pimsa

Automatically exported from code.google.com/p/pimsa

positive-selection

Scripts and procedures for detecting positively selected genes and codons in primates

redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

spaln

Genome mapping and spliced alignment of cDNA or amino acid sequences

stock-market-prediction-using-neural-networks-and-genetic-algorithm

Matlab Module for Stock Market Prediction using Simple NN

teaching-comp-genomics-vis

Comparative Genomics and Visualisation teaching module

tephra

Apache Tephra: Transactions for HBase.

tracer

Posterior summarisation in Bayesian phylogenetics

tutorials

Tutorials on evolutionary genomics