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Simon Frerich's Projects

scanpy-notebook-image icon scanpy-notebook-image

A repository for keeping conda env and docker image file for running single cell analysis using scanpy

scib icon scib

Benchmarking analysis of data integration tools

scib-pipeline icon scib-pipeline

Snakemake pipeline that works with the scIB package to benchmark data integration methods.

scina icon scina

SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples

seurat icon seurat

R toolkit for single cell genomics

spata icon spata

SPATA Package for spatial gene expression analysis

spata2 icon spata2

A Toolbox for Spatial Gene Expression Analysis

spatadata icon spatadata

The database for spatially resolved transcriptomics

squidpy icon squidpy

Spatial Single Cell Analysis in Python

tangram icon tangram

Spatial alignment of single cell transcriptomic data.

twosamplemr icon twosamplemr

R package for performing 2-sample MR using MR-Base database

vision icon vision

Signature Analysis and Visualization for Single-Cell RNA-seq

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