simonsfoundation Goto Github PK

1702_dc_lineagenets

1password-scim

1Password.com SCIM Bridge deployment examples

anno-dbnsfp

ansible-role-logrotate

Install and configure logrotate on your system.

bioinfo_pipelines_cwl

Bioinformatics pipelines using Common Workflow Language and Docker.

collective.easyslideshow

dcquantatacnetworks

django-naomi

Django email backend

django-redisboard

Redis monitoring and inspection tool in django admin.

format_phenotype_db

some scripts to format SPARK phenotype database to be used in WES QC and WGS QC.

franke_wolfe

A Numpy/Scipy implementation of the Franke Wolfe constrained optimization methodology.

gene2mesh

geocoder

A geocoder that relies on offline TIGER/Line data useful for geocoding private health information

hydrogen-benchmark-prx

ida_publications_dashboard

ida_publications_dashboard

inferelator_ng

Inferelator refactor and generalization.

jp_gene_viz

A collection of visualizations for genomics related information for use with Jupyter notebooks.

jp_svg_canvas

A very simple SVG canvas proxy widget for Jupyter visualizations

macos-enterprise-privileges

For Mac users in an Enterprise environment, this app gives the User control over administration of their machine by elevating their level of access to Administrator privileges on macOS. Users can set the time frame using Preferences to perform specific tasks such as install or remove an application.

mountainlab_test2

mprpc

A fast Python RPC library

msgpack-python

MessagePack serializer implementation for Python msgpack.org[Python]

multitask_inferelator

nnqp

Efficient numba based implementation of a nonnegative quadratic programming solver

nudge

pipeline

validated, scalable, minimalist variant detection pipeline

quanta-epcalc

Epidemic Calculator

regulatory_network_examples

Some regulatory network examples. You may need passwords to decrypt some data files.

remap2b38

Remap a bam file to a given reference, and call variants with a choice of GATK HaplotypeCaller, Freebayes, Platypus.

scaip

Tools for Calcium Imaging Analysis