Name: Sina Majidian
Type: User
Company: Johns Hopkins University
Bio: Bioinformatician | Postdoctoral Fellow at the Johns Hopkins University | Formerly at University of Lausanne & Wageningen University & Research.
Twitter: SinaMajidian
Location: Baltimore
10xpipline
A pipline for haplotyping of 10x genomics
ads1-notebooks
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
ads1-slides
Slides for Algorithms for DNA Sequencing Coursera class
algorithms_and_data_structures
180+ Algorithm & Data Structure Problems using C++
awesome-bioinformatics
A curated list of awesome Bioinformatics libraries and software.
bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
cnvanalysis
conifer
Conifer: Clonal Tree Inference for Tumor Heterogeneity with Single-Cell and Bulk Sequencing Data
coursera_cpp
Source Code and Starter Code for Accelerated Computer Science Fundamentals Specialization on Coursera
createfragmentmatrix
Convert input bam and vcf files to a fragment matrix
dendropy
diploid_stratificiations
exoncnv
Infer exon level CNV from visium spatial data
extract_poly
Fragment matrix file: A format for extracting haplotype information from BAM and VCF file for polyploids (under test)
fastoma-academy
https://oma-stage.vital-it.ch/oma/academy/module/fastOMA_2023
fastoma_repo_rooting
fastoma_tree
FastOMA is a fast pipeline for species tree inference using placement in Hierarchical Orthologous Groups (HOGs).
first-steps-with-python-training
repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training
gendiscalpy
Python bindings to GenDisCal and addition of phylogenetic tree function
graph-genomics-review
Precision pangenomics (review article on graph genomics)
grfp
Here are a set of example Relevant Background and Future Goals and Graduate Research Plan Statement statements for the NSF GRFP in Ecology and Evolutionary Biology.
hap10
A tool for reconstructing haplotypes polyploid genome using linked reads (10X Genomics).
hapcut2
software tools for haplotype assembly from sequence data
haplotyping_illumina
hapmc
NGS based haplotype assembly using matrix completion
hapotypeassembly
lrsim
10x Genomics Reads Simulator
mec
Evaluating MEC
mfb
ml
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
