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Simon Cockell's Projects

coevolution icon coevolution

Tracing co-evolution of interacting residues, a python project.

coffeebot icon coffeebot

Robot for coffee-based notifications and news.

common icon common

My own common python libraries - used by multiple of my projects.

dot2sif icon dot2sif

Parsing dot graphs to produce sif (Simple Interaction Format) graphs

effectorsvm icon effectorsvm

Machine Learning using Python bindings to LIBSVM. Sort effectors from non-effector proteins.

elmbac icon elmbac

Search for Eukaryotic Linear Motifs in Bacterial Sequences - and associated analysis

git-tutorial icon git-tutorial

A tutorial (slides, code) for Git and Github for Scientists

hprdscore icon hprdscore

Score HPRD interactions by their GO Cellular Compartment terms

lockdown-learning icon lockdown-learning

Scripts written for my Bioinformatics-along on YouTube: https://www.youtube.com/playlist?list=PLzfP3sCXUnxEu5S9oXni1zmc1sjYmT1L9

mmb8052 icon mmb8052

Documentation for MMB8852 - Bioinformatics for Biomedical Scientists

nucleaser icon nucleaser

A Python project that predicts whether a protein is a nuclease

ondextools icon ondextools

Python tools for ONDEX data preparation and processing

resolver-bot icon resolver-bot

A Google Wave Robot to translate Protein IDs on the fly.

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