slhogle Goto Github PK

code-lo-letters-2016

Supporting data and code for: "Copiotrophic marine bacteria are associated with strong iron-binding ligand production during phytoplankton blooms"

cyano-sidero-ocean

Supporting data and code for: "Siderophores as an iron source for picocyanobacteria in deep chlorophyll maximum layers of the oligotrophic ocean"

hambiconsumercompetition

Supporting data and code for: "Effects of phenotypic variation on consumer coexistence and prey community structure"

hambirnaseq

Supporting data and code for: "Localized coevolution between microbial predator and prey alters community-wide gene expression and ecosystem function"

longhurst-province-finder

Determines Longhurst Province for a given Lat/Long coordinate

marmicrodb

mg2geotraces

R code to match GEOTRACES IDP samples to some metagenome samples

milla_4sp_assembly

Python code for OT2 to setup plates for Milla's assembly experiment

ot2_plate_spotting

Protocol for Opentrons OT-2 to do high throughput plate spotting for colony counts

phosphonates

Supporting data and code for: "Phosphonate production by marine microbes: exploring new sources and potential function"

singularity-conda

A Singularity recipe that properly initialize a conda environment

slhogle.github.io

Shane Hogle's Personal Site

tara_oceans_metadata

Wrangling metadata from Tara Oceans to a useable format

utu_microbial_genomics

:computer: :floppy_disk: Some bioinformatics tutorials for the 2018 University of Turku Microbial Genomics Course

virtual_env_defs

Singularity definition files for building various software to run on HPC systems

zenodo-upload

upload big files to Zenodo using cURL, jq and bash