smangul1 Goto Github PK
Name: Serghei Mangul
Type: User
Company: USC School of Pharmacy
Bio: Assistant Prof. at USC School of Pharmacy
Location: Los Angeles
Blog: www.sergheimangul.com
Serghei Mangul's Projects
best-benchmarking
Best practices for conducting benchmarking in the most comprehensive and reproducible way
building.microbial.genomics.resources
building.microbial.genomics.resources
cmd
Miscellaneous scripts for hoffman2
cmr
CMR
command-line-teaching
online catalogue of resources and papers aimed to provide first-time learners with basic knowledge of command line
compare2clinvar
Compare the variants from the study to CLINVAR database
converge-clinvar-internal
data_reusability
reusability
de
DE package
djoin
DJoin
ec
This project includes simulated and 'golden standard' datasets, software and scripts that we used to benchmark error correction tools
ec2
new ec
error.correction.benchmarking
new EC
euvipath-scripts
Scripts and commands we used in our study : Rapid and accurate metagenomic profiling of eukaryotic and viral pathogens across various habitats and human tissues
fastrnaseqanalysishoffman2ucla
FastRNASeqAnalysisHoffman2UCLA
genomicexpression.collaboration
genomics.hoffman2
rna.seq.pipeline for hoffman2
gganatogram
Create anatograms using ggplot2
ggpubr
'ggplot2' Based Publication Ready Plots
good.software
This is the GitHub repository for our recent study "A comprehensive analysis of the usability and archival stability of omics computational tools and resources." Please follow to the repository's wiki for more information and details on how this repository is connected to the paper.
gtex.metadata
prepared metadata for GTEx project
gtexscripts
hapiso
HapIso reconstructs the haploid transcriptome of a diploid organism from long single molecule reads
hla-polysolver
Fork of the Polysolver project
immune.specificity
scripts to compare kmers across phenotypes
immunecnv
CNV of V genes
imrep-10x
10x
imrep-cloud
ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
imrep.gtex
Scripts and commands we used in our study : Profiling immunoglobulin repertoires across multiple human tissues by RNA Sequencing
jacob.ellison
collaboration with Jacob Ellison
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