About the length of reads about ribotricer HOT 3 CLOSED

It automatically determines the most informative read lengths to use (based on if the metagene distribution for a given read length exceeds the cutoff): https://github.com/smithlabcode/ribotricer/blob/master/ribotricer/detect_orfs.py#L360. The profiles are then merged by determine an appropriate offset that maximizes the cross-correlation.

You can override this behavior by providing a list of read lengths to use and their corresponding p-site offsets:

Feel free to reopen if you have any other questions.

from ribotricer.

It automatically determines the most informative read lengths to use (based on if the metagene distribution for a given read length exceeds the cutoff): https://github.com/smithlabcode/ribotricer/blob/master/ribotricer/detect_orfs.py#L360. The profiles are then merged by determine an appropriate offset that maximizes the cross-correlation.

You can override this behavior by providing a list of read lengths to use and their corresponding p-site offsets:

ribotricer/ribotricer/cli.py

Line 139 in 003a019

"--read_lengths",

ribotricer/ribotricer/cli.py

Line 153 in 003a019

"Comma separated P-site offsets for each read length "

Feel free to reopen if you have any other questions.

Hi, saketkc

I understand that Ribotricer will Assessing the Periodicity of Read Length, but will Ribotricer assess all the read length in the BAM file? Even if it is far greater than or less than 30bp.

Thanks, leelee

from ribotricer.

Yes

from ribotricer.