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3d-unet-pytorch-implementation

The implementation of 3D-UNet using PyTorch

automatic-segmentation-of-temporal-bone-structures-from-clinical-conventional-ct

biorad

A tool to facilitate the extraction of the quantitative features from medical images and other types of images with the pyradiomics package, and perform machine learning experiments with various features selection methods and classifiers

cldice

clean-the-nii

contour_auto_qatool

Public code repository to reproduce our MICCAI 2022 paper: "Automatic identification of segmentation errors for radiotherapy using geometric learning" (ID: 1361) Pre-print: https://arxiv.org/abs/2206.13317

deep-learning-papers-reading-roadmap

Deep Learning papers reading roadmap for anyone who are eager to learn this amazing tech!

deep-spectral-segmentation

[CVPR 2022] Deep Spectral Methods: A Surprisingly Strong Baseline for Unsupervised Semantic Segmentation and Localization

direct

Deep learning framework for MRI reconstruction

hausdorffloss

Implementation of Hausdorff loss function for DNN learning in segmentation tasks.

medicalzoopytorch

A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation

meta-learning-seg

Meta -Learning has been applied to perform segmentation of medical images. It can be a significant method to tackle data scarcity problem in medical domain. This repo. contains code related with my master thesis.

multi-task-deep-network-convmcd

Usage of Multi-task deep learning network for semantic segmentation in medical images

nodeformer

The official implementation of NeurIPS22 spotlight paper "NodeFormer: A Scalable Graph Structure Learning Transformer for Node Classification"

pytorch-medical-segmentation

This repository is an unoffical PyTorch implementation of Medical segmentation in 2D and 3D.

pytorch_geometric

Graph Neural Network Library for PyTorch

segloss

A collection of loss functions for medical image segmentation

segwithdistmap

How Distance Transform Maps Boost Segmentation CNNs: An Empirical Study

simpleitk-notebooks

Jupyter notebooks for learning how to use SimpleITK

sota-medseg

SOTA medical image segmentation methods based on various challenges

textclassificationwithspacyv3.0

This repository explains how to create text classification models with spaCy3.0

tri-u-mt

vit-pytorch

Implementation of Vision Transformer, a simple way to achieve SOTA in vision classification with only a single transformer encoder, in Pytorch

voxel2mesh

Voxel2Mesh: 3D Mesh Model Generation from Volumetric Data

voxelmorph-pytorch

An unofficial PyTorch implementation of VoxelMorph- An unsupervised 3D deformable image registration method