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2016-summer-workshop

ISCB DC Area Regional Student Group - Summer 2016 Workshop

ad_brain_expression

ad brain expression analyses of public data

advanced-redcap-interfaces

A talk concerning advanced REDCap interfaces and how they can help to improve research.

alignment

Spliced alignment evaluation software

alignment-and-variant-calling-tutorial

basic walk-throughs for alignment and variant calling from NGS sequencing data

angus

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

ansible-cloudman-galaxy-setup

This role is used to setup Galaxy for use with CloudMan.

ansible-kubernetes-ha-cluster

This repository provides Ansible Playbooks To setup Kubernetes HA on Redhat Enterprise Linux 7. The playbooks are mainly inspired by Kubeadm documentation and other ansible tentatives on github. The playbooks could be used separately or as one playbook for a fully fledged HA cluster.

apigenome

Libraries and command-line utilities for big data genomic analysis

appetite-textmining-code

Using GATE to text mine 'appetite'

appliedgenomics2017

JHU EN.600.649: Computational Genomics: Applied Comparative Genomics

awesome-genetics-software

A list of cool software for genetic analysis and the like

aws-igenomes

Documentation and description of AWS iGenomes S3 resource.

azure-voting-app-redis

Azure voting app used in docs.

badges

:flower_playing_cards: Readme Badges – Gotta catch 'em all

batch-adjust-warning-reports

bcbio-nextgen

Validated, scalable, community developed variant calling and RNA-seq analysis

bcbio.variation

Toolkit to analyze genomic variation data, built on the GATK with Clojure

beadarrayfiles

Python library to parse file formats related to Illumina bead arrays

bern

A neural named entity recognition and multi-type normalization tool for biomedical text mining

best-readme-template

An awesome README template to jumpstart your projects!

bioawk

BWK awk modified for biological data

biobambam

Tools for bam file processing

biocluster

Tutorial on building a computing cluster for bioinformatics

bioconda-recipes

Conda recipes for the bioconda channel.

biodatahack_2018

Two-day event hosted on the Genome Campus with an opportunity to creatively and collaboratively address challenges in the sphere of genomes and biodata. The Open Targets challenge is on how can we predict opportunities to repurpose drugs to treat unmet patient need?

biograkn-covid

BioGrakn - COVID Knowledge Graph

bioinformatics_course

biostat-578

A repository for all of my teaching material

blacktie

Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline