Comments (4)
We don't use k8s. We'd be happy about any PRs describing your experience with it.
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At RCSB PDB we are running it in k8s, for now in a dev environment but soon in production. We use a helm chart, configured for our particular environment and use case. The chart is in a private repo at the moment. @titansmc would you have any specific questions?
from mmseqs2-app.
At RCSB PDB we are running it in k8s, for now in a dev environment but soon in production. We use a helm chart, configured for our particular environment and use case. The chart is in a private repo at the moment. @titansmc would you have any specific questions?
Not questions, but if you could share the chart, we wouldn't need to write our own, it would be nice! In case it is adjusted to your environment doesn't matter, we wouldn't need to start from scratch.
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Unfortunately we can't directly share the github repo. The chart we have is too specific to our environment plus it has a lot of internal business not relevant elsewhere. I think it'd be a nice project to try to create a more general chart, possibly directly in this repo. That would be very useful for the whole community.
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Related Issues (20)
- local colabfold_batch cannot communicate with local mmseq2 web api HOT 19
- Full target/query alignment being truncated in web UI HOT 3
- docker install error: ghcr.io pull error HOT 7
- pairaln mode does not support the binary version of the taxonomy files HOT 5
- mmseqs-server: errors when called from colabfold_batch HOT 2
- App does not work with latest mmseqs version HOT 2
- Pass --max-seqs through GUI or server API?
- Implement three diferent states for visualizing query structure in Structure Viewer
- Possible to add single or multiple sequences to existing database
- Temporary redirect issue HOT 6
- Foldseek all database view rework
- Historical jobs not loaded: "Job failed. Please try again later."
- jobs stuck in PENDING status with local mmseqs-web API HOT 2
- "docker-compose run db-setup PDB" not working HOT 2
- host not found in upstream "mmseqs-web-api HOT 7
- "405 Not Allowed" returned for the queries HOT 4
- Foldseek jobs are not persistent from GUI HOT 5
- Local Foldseek searches are no longer working HOT 6
- docker-compose run db-setup XXX fails due to no space left on device
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