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containers

Containers "distribution" for reproducible neuroimaging

fmriprep_qa_guide

Rough draft of a guide for reviewing fmriprep's QA outputs

git-course

Version control with Git

interpret-iqms

Interpreting the IQMs of MRIQC

lesion-toads

Automated brain tissue segmentation method proposed by Shiee et al. 2010 interfaced by the niPype library

module-dataprocessing

A module for reproducible data processing

module-reproducible-basics

Module 0: Reproducible Basics

mri-education-resources

Resources for learning the principles of magnetic resonance imaging (MRI)

mri-journal-lounge

A repo that collects scripts that perform web scrapping of journal contents, to enable periodic review of relevant journal contents.

nenah-bids

A collaborate platform for streamlining a BIDS workflow for the NENAH study, on the linux workstation based at University of Southampton.

nh2021-jupyterhub

open-brain-consent

Making neuroimaging open from the grounds (consent form) and up (tools)

open-source-policy

Open Source Policy development for the NHS

qc-book

ISMRM '22 QC Tutorial

reproin

A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners

shinyapp_labarchives

sirrg.org

sotnir.github.io

Website for Southampton Neuroimaging Repository

statsthinking21-r

R companion for Statistical Thinking in the 21st Century

stir-exercises

Exercises for STIR

svg

repository for website of single voxel group

tni-hub-image

tni2022

Translational neuroimaging: from research to the clinics, hosted by University of Southampton Faculty of Medicine (July 2022)

tractoflow

TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity