Thomas Holder's Projects
Libraries for constraint-based layout and connector routing for diagrams.
Customized Admidio for arge-grabenstetten.de
Autodock/Vina plugin for PyMol by Daniel Seeliger
APBS and PDB2PQR software
BinaryCIF is a data format for storing text based CIF files using a more efficient binary encoding.
Conda recipes for the bioconda channel.
Official git repository for Biopython (originally converted from CVS)
Making Protein folding accessible to all!
OS-agnostic, system-level binary package manager and ecosystem
Commands and tools for building conda packages
Conda documentation
Package conda environments for redistribution
The Python programming language
A Python framework for structural bioinformatics.
Extract docx headers, footers, (formatted) text, footnotes, endnotes, properties, and images.
Python interface to DXF
An extension for Inkscape that creates jigsaw shaped pieces. Options for back, and single cut pieces.
Inkscape extensions for cave surveying
The MacPorts ports tree
An open library for the analysis of molecular dynamics trajectories
The specification of the MMTF format for biological structures
The c/c++ implementation of the MMTF API, decoder and encoder.
The MolScript program produces publication-quality images of macromolecular 3D structures.
MessagePack implementation for C and C++ / msgpack.org[C/C++]
nanoflann: a C++11 header-only library for Nearest Neighbor (NN) search with KD-trees
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.
A conda-smithy repository for pdb2pqr.