Related Issues (20)
- Integration of EPI segmentation nnUNet model in SCT HOT 3
- Outdated Node.js 16 action present in `automate-changelog-PR.yml` HOT 1
- What colormap should be used for soft segmentation QCs? (single color vs. gradient) HOT 15
- Sagittal mosaic QC report is tiny for 1.0mm istropic image with 75 slices HOT 5
- Running SCT commands in 3DSlicer GUI? HOT 3
- Fix issues with `sct_deepseg` rootlets QC report HOT 1
- Should we issue certificates for the SCT course?
- Indicate versions of `sct_deepseg` models HOT 5
- `Keyword=CombinedLabels` incompatible with `combine=1`
- pytest issue `assert not changed` and how to run in IDE HOT 3
- Custom argparse formatter fails for blank lines in multiline strings HOT 2
- Usage of `sct_label_utils -disc <file>` is unclear
- Project discs orthogonally to the spinal cord segmentation or centerline
- Straightening is not a bijective transformation HOT 25
- viewer syntax at the end does not provide correct output file name HOT 1
- Add postprocessing functionality for the new monai/nnunet models
- qc report to display manual segmentation HOT 6
- Lesion mask not properly overlaid HOT 3
- Dipy denoising functions are duplicated between `sct_maths` and `sct_denoising_onlm`/`sct_dmri_denoise_patch2self`
- Get rid of calls to `inspect.stack` HOT 1
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