spyfighting Goto Github PK

alphafold

Open source code for AlphaFold.

ankh

Ankh: Optimized Protein Language Model

ardca.jl

Autoregressive networks for protein

bmdca

Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).

confit

ctrl

Conditional Transformer Language Model for Controllable Generation

d2l-zh

《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被60多个国家的400多所大学用于教学。

deeplearning-muli-notes

Notes about courses Dive into Deep Learning by Mu Li

deepsequence

A generative latent variable model for biological sequence families.

ecnet

An evolutionary context-integrated deep learning framework for protein engineering

efficient-evolution

Efficient evolution from protein language models

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

evodiff

Generation of protein sequences and evolutionary alignments via discrete diffusion models

foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.

funcliblocal

Rosetta Funclib

gearnet

GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)

instructplm

The first large protein language model trained follows structure instructions.

learning-computation-with-chenggong

ligandmpnn

linux-tutorial

:penguin: Linux教程，主要内容：Linux 命令、Linux 系统运维、软件运维、精选常用Shell脚本

ml-papers-explained

Explanation to key concepts in ML

ngs-analysis

All files relevant to perform paired-end NGS data analysis. The reported codes are associated with Zuercher, Kleefeldt, Funke, Birnbaum, Fredens et al. (2023).

nlp-tutorial

Natural Language Processing Tutorial for Deep Learning Researchers

opencomplex

Trainable PyTorch framework for developing protein, RNA and complex models.

papers-for-molecular-design-using-dl

List of molecular design using Generative AI and Deep Learning

papers_for_protein_design_using_dl

List of papers about Proteins Design using Deep Learning

progen

Official release of the ProGen models

prostt5

Bilingual Language Model for Protein Sequence and Structure

protein-bert-pytorch

Implementation of ProteinBERT in Pytorch

protein-transfer