Comments (4)
Thanks, what kind of problems (error message) did you experience exactly? has this flag been deprecated in GCC 4.9.2?
from examl.
Ok - i see what happened. The object files (specifically axml.o
) from compiling using ICC were hanging around. Removing those and recompiling fixed the "error". Just in case anyone has the same issue, the error message looks like:
gcc -o parse-examl axml.o parsePartitions.o -lm
axml.o: In function `main':
/home/rosalyn/git/ExaML-test/parser/axml.c:2690: undefined reference to `__intel_new_proc_init'
/home/rosalyn/git/ExaML-test/parser/axml.c:2780: undefined reference to `__intel_sse2_strlen'
/home/rosalyn/git/ExaML-test/parser/axml.c:2813: undefined reference to `__intel_sse2_strlen'
axml.o: In function `get_args':
/home/rosalyn/git/ExaML-test/parser/axml.c:2065: undefined reference to `_intel_fast_memset'
axml.o: In function `mygetopt':
/home/rosalyn/git/ExaML-test/parser/axml.c:1965: undefined reference to `__intel_sse2_strchr'
axml.o: In function `get_args':
/home/rosalyn/git/ExaML-test/parser/axml.c:2126: undefined reference to `__intel_sse2_strcpy'
/home/rosalyn/git/ExaML-test/parser/axml.c:2117: undefined reference to `__intel_sse2_strcpy'
/home/rosalyn/git/ExaML-test/parser/axml.c:2121: undefined reference to `__intel_sse2_strcpy'
/home/rosalyn/git/ExaML-test/parser/axml.c:2130: undefined reference to `__intel_sse2_strcpy'
/home/rosalyn/git/ExaML-test/parser/axml.c:2176: undefined reference to `__intel_sse2_strcat'
/home/rosalyn/git/ExaML-test/parser/axml.c:2177: undefined reference to `__intel_sse2_strcat'
/home/rosalyn/git/ExaML-test/parser/axml.c:2192: undefined reference to `__intel_sse2_strcat'
/home/rosalyn/git/ExaML-test/parser/axml.c:2193: undefined reference to `__intel_sse2_strcat'
axml.o: In function `getinput':
/home/rosalyn/git/ExaML-test/parser/axml.c:1121: undefined reference to `_intel_fast_memcpy'
/home/rosalyn/git/ExaML-test/parser/axml.c:1127: undefined reference to `__intel_sse2_strlen'
/home/rosalyn/git/ExaML-test/parser/axml.c:1128: undefined reference to `__intel_sse2_strcpy'
axml.o: In function `getdata':
/home/rosalyn/git/ExaML-test/parser/axml.c:746: undefined reference to `__intel_sse2_strlen'
/home/rosalyn/git/ExaML-test/parser/axml.c:749: undefined reference to `__intel_sse2_strcpy'
axml.o: In function `addword':
/home/rosalyn/git/ExaML-test/parser/axml.c:971: undefined reference to `__intel_sse2_strlen'
/home/rosalyn/git/ExaML-test/parser/axml.c:973: undefined reference to `__intel_sse2_strcpy'
axml.o: In function `getDataTypeString':
/home/rosalyn/git/ExaML-test/parser/axml.c:2264: undefined reference to `__intel_sse2_strcat'
/home/rosalyn/git/ExaML-test/parser/axml.c:2260: undefined reference to `__intel_sse2_strcat'
/home/rosalyn/git/ExaML-test/parser/axml.c:2256: undefined reference to `__intel_sse2_strcat'
/home/rosalyn/git/ExaML-test/parser/axml.c:2264: undefined reference to `__intel_sse2_strcat'
/home/rosalyn/git/ExaML-test/parser/axml.c:2260: undefined reference to `__intel_sse2_strcat'
axml.o:/home/rosalyn/git/ExaML-test/parser/axml.c:2256: more undefined references to `__intel_sse2_strcat' follow
axml.o: In function `smoothFreqs':
/home/rosalyn/git/ExaML-test/parser/axml.c:2386: undefined reference to `_intel_fast_memcpy'
axml.o: In function `genericBaseFrequencies':
/home/rosalyn/git/ExaML-test/parser/axml.c:2522: undefined reference to `_intel_fast_memset'
parsePartitions.o: In function `parsePartitions':
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:412: undefined reference to `_intel_fast_memset'
parsePartitions.o: In function `lineContainsOnlyWhiteChars':
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:67: undefined reference to `__intel_sse2_strlen'
parsePartitions.o: In function `parsePartitions':
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:419: undefined reference to `__intel_sse2_strlen'
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:421: undefined reference to `__intel_sse2_strcpy'
parsePartitions.o: In function `analyzeIdentifier':
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:97: undefined reference to `_intel_fast_memset'
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:139: undefined reference to `__intel_sse2_strcpy'
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:149: undefined reference to `__intel_sse2_strcpy'
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:150: undefined reference to `__intel_sse2_strcat'
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:173: undefined reference to `__intel_sse2_strcpy'
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:174: undefined reference to `__intel_sse2_strcat'
parsePartitions.o: In function `lineContainsOnlyWhiteChars':
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:67: undefined reference to `__intel_sse2_strlen'
parsePartitions.o: In function `handleExcludeFile':
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:834: undefined reference to `__intel_sse2_strcpy'
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:835: undefined reference to `__intel_sse2_strcat'
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:836: undefined reference to `__intel_sse2_strcat'
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:863: undefined reference to `__intel_sse2_strcpy'
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:864: undefined reference to `__intel_sse2_strcat'
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:865: undefined reference to `__intel_sse2_strcat'
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:893: undefined reference to `__intel_sse2_strcpy'
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:895: undefined reference to `__intel_sse2_strcat'
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:957: undefined reference to `__intel_sse2_strcpy'
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:958: undefined reference to `__intel_sse2_strcat'
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:959: undefined reference to `__intel_sse2_strcat'
parsePartitions.o: In function `parseSecondaryStructure':
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:1250: undefined reference to `__intel_sse2_strlen'
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:1251: undefined reference to `__intel_sse2_strcpy'
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:1265: undefined reference to `__intel_sse2_strlen'
/home/rosalyn/git/ExaML-test/parser/parsePartitions.c:1266: undefined reference to `__intel_sse2_strcpy'
collect2: error: ld returned 1 exit status
make: *** [parse-examl] Error 1
from examl.
Also, sorry for the bother!
from examl.
No problem, glad that this issue resolved itself.
from examl.
Related Issues (14)
- implement fault tolerance
- make outcome of collective operations independent of number of processes
- use mpi_file routines at startup
- implement -f e/n for examl
- add -msse to CFLAGS HOT 1
- Memory Leaks HOT 3
- Large number of sites overflows in parser HOT 6
- Assertion `tr->ntips == tr->mxtips' failed HOT 2
- question about parser HOT 1
- fail at "make -f Makefile.MIC.icc" HOT 1
- how to coompile the program in Arm architecture v8 HOT 1
- libmpi.so.40: cannot open shared object file: No such file or directory HOT 1
- implicit declaration of function ‘basename’ HOT 1
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from examl.