Comments (1)
Hi, this is a bit tricky but doable.
First you'll have to generate a model of your custom marker(s) using the train
module. You'll need a handful of ground-truth protein sequences as seeds and reference genomes on which the model can be trained.
After this, copy over the resulting .hmm and .fa files to UFCG_PATH/config/model/pro
and UFCG_PATH/config/seq/pro
, respectively, where UFCG_PATH
is your local installation path which can be found by running ufcg download -c
.
Then, generate a comma-separated string that includes the names your custom gene(s) and 61 marker genes (e.g. GENE1,GENE2,...,ACT1,ATP6,...,ZPR1
), and pass this string via -s
flag of the profile
module. This will allow you to extract your extra gene(s) on top of the original marker genes.
These may sound confusing and tedious, which I apologize, so please let me know if you have any further questions or encounter any problems following the procedure.
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