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Name: Steve Marshall
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Name: Steve Marshall
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Software sets up and runs an genome sequencing analysis workflow using AWS Batch and AWS Step Functions.
Various examples of interacting with AWS through both the CLI and the SDK
Genomics Workflows on AWS
simple jobs submission via command-line for AWS batch
A minimal benchmark for scalability, speed and accuracy of commonly used open source implementations (R packages, Python scikit-learn, H2O, xgboost, Spark MLlib etc.) of the top machine learning algorithms for binary classification (random forests, gradient boosted trees, deep neural networks etc.).
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
Fork of official git repository for Biopython
Data exploration with multiple machine learning algorithms
Course Materials for Genomics Data Mining
Source code for the CancerGD resource
Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens
ChIP-seq analysis notes from Ming Tang
Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE
Pre-processing of multiplexed CRISPR / shRNA Screens
Example Cloud Datalab iPython Notebooks for genomics use cases.
Contains files for the deep learning in genomics primer.
This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content microscopy data with deep learning"
Deep proteome inference from peptide profiles
Deconvolution of seed effects from gene effects in large scale RNAi screens
A SingleCell RNASeq pre-processing snakemake workflow
Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.
Example CellProfiler pipelines.
Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.
GenomeTools genome analysis system.
A complete daily plan for studying to become a Google software engineer.
imNet: a Sequence Network Construction Toolkit
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.