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3dprintyourbrain

How to 3D print your brain from a T1 MRI image.

abide

ABIDE analyses

circos_brain

Visualize brain connections using Circos

deep_mri_brain_extraction

3D convolutional neural network for MRI brain extraction

dicom2bids

docker-fsl

FSL in Docker

docker-workshop

Docker Workshop

docker_dsri

exploredti_scripts

This repository holds several explanations of ExploreDTI scripts

freesurfer

Neuroimaging analysis and visualization suite

fsl-bash-scripts

For making FSL processing a bit easier.

histoannot

online histology annotation webapp

installdsripod_neuroimg

Install essential dependencies and neuroimaging softwares on Maastricht University DSRI cluster

journal_club

Fundamental Neuromodulation

magnitude

scripts for the fMRI magnitude manuscript

mdt

Microstructure Diffusion Toolbox

mid_task

Processing of E-Prime data from the MID task

myelin-validation-systematic-review

A companion resource to Lazari & Lipp, 2020

neurodocker

Generate custom Docker and Singularity images, and minimize existing containers

neuromarvl

Cloned from https://bitbucket.org/jimmux/neuromarvl

nipy

Neuroimaging in Python FMRI analysis package

presentations

r

Using R with Jupyter / RStudio on Binder

rhn

Regions for Health - WHO

ruby-ex

scrum-club

Software/Tools for Scientific Computing and Research @ UM Club

stijnimaging.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

subcortical-auditory-atlas

Resources from our human subcortical auditory pathway mapping project

utap_wp1

Processing UHF MRI :brain: data