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alphafold

Open source code for AlphaFold.

apjok-et-al-deepmine-natmicrobiol

biomartr

Genomic Data Retrieval with R

docker-builds

:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics

gbif-backbone-sql

GBIF Darwin Core taxonomic backbone to SQLite

genbankr

ggplot2

An implementation of the Grammar of Graphics in R

hoardr

Manage cached files

isc-proposal

Boilerplate proposal for R Consortium ISC Proposals

kaptive

koncz-et-al-genomic-surveillance

kraken2

The second version of the Kraken taxonomic sequence classification system

mag

Assembly and binning of metagenomes

metadbparse

Parsing metabolomics databases with publically available resources

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

mulea

MulEA - A Tool for Multi Enrichment Analysis

muleadata

muleaData is an ExperimentHubData Bioconductor package for the mulea R package

phylodeep

PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.

pruning_tree

Excluding too long branches from a phylogenetic tree

repro

reproducibility-workshop

Materials for the Physalia course "Reproducibility in Bioinformatics" July 11-13, 2022

restez

:sleeping: :open_file_folder: Create and Query a Local Copy of GenBank in R

root_digger

A tool to root phylogenies

taxizedb

Tools for Working with Taxonomic SQL Databases

webchem

Chemical Information from the Web

webchem_paper

A paper describing the webchem package

webseq

Tools for Working with Biological Sequence Databases in R