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23andus

BD2K Hackathon / 23andus project

biolink-model

Schema and generated objects for biolink data model and upper ontology

biothings.drugs

BioThings API for drugs.

blazmass_compil

Blazmass proteomic search engine with ComPIL integration for metaproteomics

bw_old

cftools

Tools for analyzing ClusterFinder data with Matlab

cm7_cm1e2d56col_unenr123_rawextract_2017

CM7_CM1E2d56col_unenr123_rawextract_2017

cmappy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

cq-notebooks

Notebooks for answering competency questions

create_compil

Pipeline for creating compil database for gut microbiome metaproteomics

data_drops

Submission for topcoder LIVING PROGRESS - DATA TO DROPS - KEYWORD CATEGORIZATION competition

ema

faers

playing with faers data

fissea

Functional Impact SNP Set Enrichment Analysis

fusion_aw_20170831

Fusion_AW_20170831

goatools

Python scripts to find enrichment of GO terms

humandiseaseontology

Repository for the Human Disease Ontology.

l1000-exploration

l1ktools

mongo

local_wikibase_bot_example

an example of setting up a local wikibase, initializing it for a bot run, and doing a bot run

mesh-parser

simple mesh to json parser

ncats-ingest

Management of ingestion of sources for NCATS-translator

nob-hq

Administrative repository for the Network of BioThings

platecapture

pmidtool

Allow you to create or retrieve a wikidata item that represents a scientific journal article given a pubmed ID

prefixcommons-py

Prefix commons python utlities

purl.obolibrary.org

A new system for managing OBO PURLs

rosalind

Python code for rosalind.info

scikit-learn

scikit-learn: machine learning in Python

semmed-biolink

normalization of sememd db to biolink model