suinleelab Goto Github PK

aicontrol.jl

Implementation of the AIControl paper in Julia 1.0

attributionpriors

Tools for training explainable models using attribution priors.

cl-explainability

Contrastive Corpus Attribution (COCOA)

coai

Cost-Aware AI

contrastivevi

contrastivevi-reproducibility

Repository for reproducing contrastiveVI results.

cxr_adv

Repository for the paper "An Adversarial Approach for the Robust Classification of Pneumonia from Chest Radiographs"

cxr_covid

Code for paper "AI for radiographic COVID-19 detection selects shortcuts over signal"

deep_attribution_priors

Reference implementation of "Learning Deep Attribution Priors Based On Prior Knowledge"

deepprofile

DeepProfile framework, which learns a variational autoencoder (VAE) network from a vast quantity of publicly available gene expression samples and uses the learned network to encode a low-dimensional representation (LDR) for predicting complex phenotypes

deepprofile-data

Data for "A deep profile of gene expression across 18 human cancers"

deepprofile-study

Code for paper "A deep profile of gene expression across 18 human cancers"

deepshap

Experiments for DeepSHAP paper.

derm_audit

dime

Code for the paper "Estimating Conditional Mutual Information for Dynamic Feature Selection"

eedrp

enablage

express

Code for paper "Uncovering expression signatures of synergistic drug response in acute myeloid leukemia by explaining AI ensembles"

hd-ae

Code for paper "Transferable representations of single-cell transcriptomic data"

impact

This repository provides the dataset and code of Interpretable machine learning prediction of all-cause mortality.

md-ad

methylvi

A deep generative model for single-cell methylation data

mm-cvae

Implementation of the moment matching contrastive VAE

monet

Transparent medical image AI via an image–text foundation model grounded in medical literature

pac

Pathway Communities

path_explain

A repository for explaining feature attributions and feature interactions in deep neural networks.

pause

Code for paper "Principled feature attribution for unsupervised gene expression analysis"

phase

Repository for the PHASE (PHysiologicAl Signal Embeddings) project.

removal-robustness

shapley_algorithms