sujunhao Goto Github PK

.tmux

Oh My Tmux! My pretty + versatile tmux configuration that just works (imho the best tmux configuration)

adarkroom

A Dark Room - A Minimalist Text Adventure

algorithms

algorithms-1

Minimal examples of data structures and algorithms in Python

alphafold

Open source code for AlphaFold.

awesome

A curated list of awesome lists

bert-relation-extraction

PyTorch implementation for "Matching the Blanks: Distributional Similarity for Relation Learning" paper

bioconda-recipes

Conda recipes for the bioconda channel.

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

caffe

Caffe: a fast open framework for deep learning.

callings-nf

GATK RNA-Seq Variant Calling in Nextflow

clair

Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling

complete-striped-smith-waterman-library

debga

de Bruijn Graph-based read aligner

debwt

implementation of a BWT constructor

deep-photo-styletransfer

Code and data for paper "Deep Photo Style Transfer": https://arxiv.org/abs/1703.07511

deeplearning-biology

A list of deep learning implementations in biology

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

dive-into-machine-learning

Dive into Machine Learning with Python Jupyter notebook and scikit-learn

experiment

gcsa2

BWT-based index for graphs

geniass

Unofficial GENIA Sentence Splitter repository (no official website even exists anymore)

geo_pattern

Create beautiful generative geometric background images from a string.

germline

compute IBD, base on GERMLINE version1.4.1, fix bug and add features

gssw

efficient alignment of strings to partially ordered string graphs

identicon.js

GitHub-style identicons in JS with no server-side processing.

jellyfish

A fast multi-threaded k-mer counter

k-bert

Source code of K-BERT

klib

A standalone and lightweight C library

kraken

Kraken taxonomic sequence classification system