sulcgroup Goto Github PK
Name: Petr Šulc's lab
Type: User
Company: Arizona State University
Bio: Software (not only) for DNA and RNA simulations and data analysis
Twitter: petr_sulc
Location: Tempe, AZ
Blog: sulclab.org
Petr Šulc's lab's Projects
alloassembly
anm-oxdna
oxDNA/oxRNA code that implements Anisotropic Network Model representation of proteins, allowing for simulations of hybrid protein-DNA/RNA nanostructures as well as biological complexes on CPU and GPU
crowderoxdna
An extended version of the oxDNA code with ability to include crowder particles
forces
Force calculation for RNA transcripts
hairygami
hinges
hinges
nanobase
nanobase.org
ox-serve
Backend for driving oxDNA simulations from oxView.
oxdna-development
development and testing of new features for the oxDNA/oxRNA/ANM-oxDNA models
oxdna-viewer
oxView: Visualization and editing tool for DNA/RNA nanotechnology and oxDNA/oxRNA configuration analysis
oxdna-web
Environment for running oxdna.org webserver for oxDNA/oxRNA simulation submission and analysis
oxdna_analysis_tools
A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA
oxpy_anm
pypatchy
utils for patchy particles
satassembly-pyrochlore
stochastic-assembly
tmsd_fitting
A set of scripts to analyze toehold-mediated strand displacement
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